Publications
As corresponding author:
- Exposure to third generation cephalosporin induces L-form
transition in Shigella sonnei potentially acting as a bacterial
reservoir for persistent infection. Sanjib Das, Arindam
Mukherjee, Prolay Halder, Soumalya Banerjee, Supriya Mandal,
Nivedita Roy, Ashis Debnath, Sreejani Banerjee, Jiro Mitobe,
Jeffrey H. Withey, Asish K. Mukhopadhyay, Santasabuj Das, Debaki
Ranjan Howlader, Hemanta Koley. Uploaded on bioRxiv. (doi:
https://doi.org/10.1101/2025.07.17.665312). Submitted to Journal
of Bacteriology on 16thJuly, 2025.
- L-PaF/E/ME/BECC438b primes interferon-mediated immune-stromal
lung networks against Pseudomonas aeruginosa in mice.Debaki
Ranjan Howlader, Rahul Shubhra Mandal, Satabdi Biswas, Zackary
Dietz, Prolay Halder, Robert K Ernst, William D Picking, Wendy L
Picking. Under review at npj Vaccines.
As first and co-author:
- A high-throughput multi-species platform using biolayer
interferometry immunosorbent assay (BLI-ISA) as an
alternative to indirect ELISA for vaccine development. Ti
Lu, Md Shafiullah Parvej, Sean K. Whittier, Suhrid Maiti,
Zackary K. Dietz,Debaki R. Howlader, Mst Nusrat Zahan,
Satabdi Biswas, William D. Picking, Wendy L. Picking.
Uploaded on bioRxiv. (doi:
https://doi.org/10.1101/2025.07.24.666607).
- Development of a bivalent protein subunit vaccine
against infection by Pseudomonas aeruginosa and
Staphylococcus aureus. Maiti S, Halder P, Howlader DR, Dietz ZK, Biswas S, Parvej MS, Zahan MN, Lu T, Snider TA, Whittier
SK, Picking WD, Picking WL. NPJ Vaccines. 2025 Jul
25;10(1):169. doi: 10.1038/s41541-025-01220-y. PMID:
40715169; PMCID: PMC12297384.
- The adoption of a westernized gut microbiome in Indian
Immigrants and Indo-Canadians is associated with dietary
acculturation. D'Aloisio LD, Ballal M, Ghosh S, Haskey N,
Abulizi N, Karimianghadim R, Liu C, Sruthi P, Nagarajan L,
Vasudevan S, Shetty V, Purandare M, Bhaumik U, Howlader DR,
Pakpour S, Barnett J, Gibson DL. NPJ Biofilms Microbiomes.
2025 Aug 3;11(1):151. doi: 10.1038/s41522-025-00778-8. PMID:
40753175; PMCID: PMC12317999.
- The Fusion Subunit Vaccine L-DBF Protects Aged Mice
Against Heterologous Lethal Shigella Challenge After Prior
Exposure. Md. Shafiullah Parvej, Ti Lu, Suhrid Maiti,
Zackary K Dietz, Debaki R Howlader, Mst. Nusrat Zahan, Alexa
Cato, Satabdi Biswas, William D Picking, Wendy L Picking.
Front. Immunol. 2025. doi: 10.3389/fmmu.2025.1586537.
- Spatial visualization provides insight into immune
modulation by an L-DBF vaccine formulation against Shigella.
Lu T, Kramer ST, York MA, Zahan MN, Howlader DR, Dietz ZK,
Whittier SK, Bivens NJ, Jurkevich A, Coghill LM, Picking WD,
Picking WL. Front Immunol. 2025 Apr 23;16:1577040. doi:
10.3389/fimmu.2025.1577040. PMID: 40336950; PMCID:
PMC12056741.
- Vaccination with a Protective Ipa Protein-Containing
Nanoemulsion Differentially Alters the Transcriptomic
Profiles of Young and Elderly Mice following Shigella
Infection. Lu T, Raju M, Howlader DR, Dietz ZK, Whittier SK,
Varisco DJ, Ernst RK, Coghill LM, Picking WD, Picking WL.
Vaccines (Basel). 2024 Jun 4;12(6):618. doi:
10.3390/vaccines12060618. PMID: 38932347; PMCID:
PMC11209624.
- Development of a nano-emulsion based multivalent protein
subunit vaccine against Pseudomonas aeruginosa.
Debaki R
Howlader, Rahul Shubhra Mandal, Ti Lu, Suhrid Maiti, Zackary
K Dietz, Sayan Das, Sean K Whittier, Aaron C Nagel, Satabdi
Biswas, David J Varisco, Francesca M Gardner, Robert K
Ernst, William D Picking, Wendy L Picking. Front. Immunol.
2024 Apr. 17. doi.org/10.3389/fimmu.2024.1372349
- The L-DBF vaccine cross protects mice against different
Shigella serotypes after prior exposure to the pathogen. Lu
T, Howlader DR, Das S, Dietz ZK, Nagel AC, Whittier SK,
Picking WD, Picking WL. Microbiol Spectr. 2023 Dec
12;11(6):e0006223. doi: 10.1128/spectrum.00062-23. Epub 2023
Oct 3. PMID: 37787548; PMCID: PMC10714971.
- Impact of the TLR4 agonist BECC438 on a novel vaccine
formulation against Shigella spp. Lu T, Das S, Howlader DR,
Jain A, Hu G, Dietz ZK, Zheng Q, Ratnakaram SSK, Whittier
SK, Varisco DJ, Ernst RK, Picking WD, Picking WL. Front
Immunol. 2023 Sep 6;14:1194912. doi:
10.3389/fimmu.2023.1194912. PMID: 37744341; PMCID:
PMC10512073.
- Immunogenicity and protective efficacy of nanoparticle
formulations of L-SseB against Salmonella infection. Das S,
Howlader DR, Lu T, Whittier SK, Hu G, Sharma S, Dietz ZK,
Ratnakaram SSK, Varisco DJ, Ernst RK, Picking WD and Picking
WL. Front. Immunol. 2023 Jun 30. 14:1208848. doi:
10.3389/fimmu.2023.1208848.
- A protein subunit vaccine elicits a balanced immune
response that protects against Pseudomonas pulmonary
infection. Howlader DR, Das S, Lu T, Mandal RS, Hu G,
Varisco DJ, Dietz ZK, Ratnakaram SSK, Ernst RK, Picking WD,
Picking WL. NPJ Vaccines. 2023 Mar 14;8(1):37. doi:
10.1038/s41541-023-00618-w. PMID: 36918600; PMCID:
PMC10012293.
- A tetravalent Shigella Outer Membrane Vesicles based
candidate vaccine offered cross-protection against all the
serogroups of Shigella in adult mice. Ushasi Bhaumik, Prolay
Halder, Debaki Ranjan Howlader, Soumalya Banerjee, Suhrid
Maiti, Shanta Dutta, Hemanta Koley. Microbes and Infection.
2023 Jan 22. doi: 10.1016/j.micinf.2023.105100.
- An Experimental Adult Zebrafish Model for Shigella
Pathogenesis, Transmission, and Vaccine Efficacy
Studies.Howlader DR, Bhaumik U, Halder P, Satpathy A, Sarkar
S, Ghoshal M, Maiti S, Withey JH, Mitobe J, Dutta S, Koley
H. Microbiol Spectr. 2022 Jun 29;10(3):e0034722. doi:
10.1128/spectrum.00347-22. Epub 2022 May 23. PMID: 35604149;
PMCID: PMC9241715.
- L-DBF Elicits Cross Protection Against Different
Serotypes of Shigella spp. Lu Ti, Das Sayan, Howlader Debaki
R., Zheng Qi, Ratnakaram Siva Sai Kumar, Whittier Sean K.,
Picking William D., Picking Wendy L. Frontiers in Tropical
Diseases. 2021. doi: 10.3389/fitd.2021.729731. ISSN:
2673-7515.
- Development of a Self-Adjuvanting, Cross-Protective,
Stable Intranasal Recombinant Vaccine for Shigellosis. Baruah N, Ahamad N, Maiti S,
Howlader DR, Bhumik U, Patil
VV, Chakrabarti MK, Koley H, Katti DS. ACS Infect Dis. 2021
Nov 4. doi: 10.1021/acsinfecdis.1c00345. Epub ahead of
print. PMID: 34734708.
- Effect of Two Unique Nanoparticle Formulations on the
Efficacy of a Broadly Protective Vaccine Against Pseudomonas Aeruginosa.
Howlader DR, Das S, Lu T, Hu G, Varisco DJ,
Dietz ZK, Walton SP, Ratnakaram SSK, Gardner FM, Ernst RK,
Picking WD, Picking WL. Front Pharmacol. 2021 Aug
18;12:706157. doi: 10.3389/fphar.2021.706157. PMID:
34483911; PMCID: PMC8416447.
- Bivalent non-typhoidal Salmonella outer membrane
vesicles immunized mice sera confer passive protection
against gastroenteritis in a suckling mice model. Maiti S,
Howlader DR, Halder P, Bhaumik U, Dutta M, Dutta S, Koley H.
Vaccine. 2021 Jan 8;39(2):380-393. doi:
10.1016/j.vaccine.2020.11.040. Epub 2020 Dec 7. PMID:
33303233.
- Development of a Broadly Protective, Self-Adjuvanting
Subunit Vaccine to Prevent Infections by Pseudomonas aeruginosa. Das S,
Howlader DR, Zheng Q, Ratnakaram SSK,
Whittier SK, Lu T, Keith JD, Picking WD, Birket SE, Picking
WL. Front Immunol. 2020 Nov 17; 11:583008. doi:
10.3389/fimmu.2020.583008. eCollection 2020. PMID: 33281815.
- Anti-virulence activity of polyphenolic fraction
isolated from Kombucha against Vibrio cholerae. Bhattacharya
D, Sinha R, Mukherjee P, Howlader DR, Nag D, Sarkar S, Koley
H, Withey JH, Gachhui R. Microb Pathog. 2020 Mar;
140:103927. doi: 10.1016/j.micpath.2019.103927. Epub 2019
Dec 14. PMID: 31846743.
- Studies on formulation of a combination heat killed
immunogen from diarrheagenic Escherichia coli and Vibrio
cholerae in RITARD model. Mukherjee P, Mondal V, Bhaumik U,
Sinha R, Sarkar S, Mitra S, Howlader DR, Maiti S,
Mukhopadhyay AK, Dutta S, Koley H. Microbes Infect. 2019
Oct-Nov;21(8-9):368-376. doi: 10.1016/j.micinf.2019.02.007.
Epub 2019 Mar 7. PMID: 30853357.
- Development of a novel S. Typhi and Paratyphi A outer
membrane vesicles based bivalent vaccine against enteric
fever.Howlader DR, Koley H, Sinha R, Maiti S, Bhaumik U,
Mukherjee P, Dutta S. PLoS One. 2018 Sep 14;13(9):e0203631.
doi: 10.1371/journal.pone.0203631. eCollection 2018. PMID:
30216367.
- Retinoic acid pre-treatment down regulates V. cholerae
outer membrane vesicles induced acute inflammation and
enhances mucosal immunity. Sinha R, Howlader DR, Ta A, Mitra
S, Das S, Koley H. Vaccine. 2017 Jun 16;35(28):3534-3547.
doi: 10.1016/j.vaccine.2017.05.036. Epub 2017 May 22. PMID:
28545924.
- Zebrafish as a novel model for non-typhoidal Salmonella
pathogenesis, transmission and vaccine efficacy.Howlader DR,
Sinha R, Nag D, Majumder N, Mukherjee P, Bhaumik U, Maiti S,
Withey JH, Koley H. Vaccine. 2016 Sep 30;34(42):5099-5106.
doi: 10.1016/j.vaccine.2016.08.077. Epub 2016 Sep 7. PMID:
27614779.
- Mice with Streptozotocin-Induced Hyperglycemia are
Susceptible to Invasive Enteric Bacterial Infection. Koley
H, Ghosh P, Sinha R, Mitra S, Mukherjee P, Howlader DR,
Chaki C, Nag D. Jpn J Infect Dis. 2017 Jan 24;70(1):111-114.
doi: 10.7883/yoken.JJID.2015.418. Epub 2016 May 9. PMID:
27169940.
- Evaluation of immunogenicity and protective efficacy of
combination heat-killed immunogens from three entero-invasive
bacteria in rabbit model. Mukherjee P, Raychaudhuri S, Nag
D, Sinha R, Howlader DR, Mukhopadhyay AK, Koley H.
Immunobiology. 2016 Aug;221(8):918-26. doi:
10.1016/j.imbio.2016.03.002. Epub 2016 Mar 18. PMID:
27039316.
- Retinoic acid decreases the severity of Salmonella
enterica serovar Typhimurium mediated gastroenteritis in a
mouse model. Sinha R, Howlader DR, Mukherjee P, Rai S, Nag
D, Koley H. Immunobiology. 2016 Jul;221(7):839-44. doi:
10.1016/j.imbio.2016.01.011. Epub 2016 Jan 29. PMID:
26858186.
Review articles:
- Shigella Vaccines: The Continuing Unmet Challenge.
International Journal of Molecular Sciences.Lu T, Das S,
Howlader DR, Picking WD, Picking WL.International Journal of
Molecular Sciences. 2024; 25(8):4329. doi.org/10.3390/ijms25084329.
- A story of Shigella vaccine development in ICMR-NICED
involving multidimensional approaches. Hemanta Koley, Ushasi
Bhaumik, Namrata Baruah, Soma Mitra, Suhrid Maiti,
Dhrubajyoti Nag, Soumik Barman, Ritam Sinha, Debaki R.
Howlader, Priyadarshini Mukherjee, Prolay Halder, Soumalya
Banerjee, Sanjib Das, Nivedita Ray, Jiro Mitobe, Jeffrey H.
Withey, Manoj K. Chakrabarti, Shanta Dutta. Indian Journal
of Physiology and Allied Sciences (2023); doi:
10.55184/ijpas.v75i02.08.
- A brief review on the immunological scenario and recent
developmental status of vaccines against enteric
fever.Howlader DR, Koley H, Maiti S, Bhaumik U, Mukherjee P,
Dutta S. Vaccine. 2017 Nov 7;35(47):6359-6366. doi:
10.1016/j.vaccine.2017.09.066. Epub 2017 Oct 12. PMID:
29031693 Review.
Book chapter:
Assessment of Antimicrobial Activity of Different
Phytochemicals Against Enteric Diseases in Different Animal
Models. Koley H, Howlader DR, Bhaumik U. New Look to
Phytomedicine, 563-580.
Patent:
A Bivalent Outer Membrane Vesicles (BOMVs) based vaccine
against typhoidal salmonellae. Koley H, Howlader DR,
Dutta S. PCT number: PCT/IN2018/050158. It was published in WIPO
with the following detail: WO2018179003. This was granted in the
US with the grant number: 11633466. Enteric fever
vaccine based on outer membrane vesicles from two different
strains of typhoidal salmonella species. Application granted
on: 04.25.2023. International Application No.:
PCT/IN2018/050158. IPC: A61K 39/112 (2006.01).
Ph.D. thesis:
Studies on immunogenic protective efficacy and
immunomodulatory roles of Outer Membrane Vesicles OMVs from
typhoidal salmonellae. Howlader DR. 2019. https://shodhganga.inflibnet.ac.in/handle/10603/489908
Published abstracts from different conferences (first
author/presenter only):
1.Debaki R. Howlader, Sayan Das, Ti Lu, Rahul Shubhra Mandal, Gang
Hu, David J. Varisco, Zackary K. Dietz, Siva Sai Kumar Ratnakaram,
Robert K. Ernst, William D. Picking, and Wendy L. Picking.
Development of a nano-emulsion based multivalent protein subunit
vaccine against Pseudomonas aeruginosa. ASM Microbe, 2023. Houston,
Texas, USA.
2. Debaki R. Howlader, Sayan Das, Ti Lu, Rahul Shubhra Mandal, Gang
Hu, David J. Varisco, Zackary K. Dietz, Siva Sai Kumar Ratnakaram,
Robert K. Ernst, William D. Picking, and Wendy L. Picking. A
multivalent protein subunit vaccine elicits balanced immune response
that protects against Pseudomonas aeruginosa pulmonary infection.
20th Annual Great Plains Infectious Disease (GPID) conference.
November 2022. Missouri, USA.
3. Debaki R Howlader, Sayan Das, Ti Lu, Sean K Whittier, David J
Varisco, Zackary K Dietz, Robert K Ernst, William D Picking, and
Wendy L Picking*. Development of a broad-spectrum Pseudomonas
aeruginosa nanoparticle based TTSS and ExlA protein subunit
immunogen eliciting protective immunity in mice and rats. ASM
Microbe, 2022. Washington DC, USA.
4. Debaki R Howlader, Sayan Das, Ti Lu, Gang Hu, David J Varisco,
Zackary K Dietz, Sierra P Walton, Siva Sai Kumar Ratnakaram,
Francesca M Gardner, Robert K Ernst, William D Picking, and Wendy L
Picking*. Effect of Two Unique Nanoparticle Formulations on the
Efficacy of a Broadly Protective Vaccine Against Pseudomonas
Aeruginosa. 19th Annual Great Plains Infectious Disease (GPID)
conference. November 2021. Missouri, USA.
5. Debaki Ranjan Howlader, Prolay Halder, Suhrid Maiti, Ushasi
Bhaumik, Shanta Dutta, Hemanta Koley. Cross protective nature of a
newly developed bivalent typhoid vaccine in response to non-typhoidal
infection. 54th US-Japan Joint Panel Conference on Cholera and Other
Bacterial Enteric Infections.10 th -13 th December 2019, Osaka,
Japan.
6. Debaki Howlader, Hemanta Koley*. Typhoidal bivalent Outer
Membrane Vesicles (OMVs) induce protective immune response in mice.
USJCMSP, 2019, Hanoi, Vietnam.
7. Debaki R Howlader, Hemanta Koley, Shanta Dutta. Mechanism of
protection of a newly developed typhoidal Salmonella OMVs
immunogen in direct and passive mice model. 106th Indian Science
Congress, Jalandhar 2019.
8. Debaki Ranjan Howlader, Hemanta Koley*. Bivalent outer membrane
vasicles based immunogen of S.Typhi and Paratyphi A induce adaptive
immunity and protective efficacy in mice. 29th International
Conference on Vaccines and Immunization, March 19-20, 2018, London,
UK.
9. Debaki R Howlader, Hemanta Koley*, Ushasi Bhaumik. A new
zebrafish model for Shigella pathogenesis, transmission, vaccine
efficacy and therapeutic studies. 19thCongress of The Parenteral
and Enteral Nutrition Society of Asia: PENSA, 13-16th June
2018.Seoul, South Korea.
10. Debaki Ranjan Howladar, Hemanta Koley, Ritam Sinha,
Priyadarshini Mukherjee, Suhrid Maiti, Ushasi Bhaumik, Shanta Dutta.
Bivalent outer membrane vesicles-based immunogen of S. Typhi and
Paratyphi A induce adaptive immunity and protective efficacy in
mice. Asian Conference on Diarrheal Disease and Nutrition (ASCODD),
30th October - 01 November 2017, Kochi, India.
11. Debaki R Howlader, Hemanta Koley*, Ritam Sinha, Suhrid Maiti,
Ushasi Bhaumik, Priyadarshini Mukherjee, Shanta Dutta. A novel
bivalent typhoidal Salmonella Outer Membrane Vesicles (OMVs)
based immunogen against enteric fever. 5th Mol Micro & 4th M4
Meeting, University of Birmingham, 13-14th September 2017.
12. Debaki Ranjan Howlader, Ritam Sinha, Priyadarshini Mukherjee,
Dhrubajyoti Nag and Hemanta Koley. Pentavalent heat killed
Salmonella enterica immunogen induce adaptive immune response in
adult mice model. 103rd Indian Science Congress. January 3-7, 2016,
Mysuru, India.
13. Debaki Ranjan Howlader, Ritam Sinha, Priyadarshini Mukherjee,
Dhrubajyoti Nag and Hemanta Koley. Pentavalent heat killed
Salmonella enterica immunogen induce adaptive immune response and
protective efficacy in passive suckling mice model. J Vaccines
Vaccine. DOI: 10.4172/2157-7560.C1.034. 8th Indo Global summit and
Expo on Vaccines, Therapeutics & Healthcare. November 02-04, 2015
HICC, Hyderabad, India.